PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s662861g009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 563aa    MW: 62750.5 Da    PI: 4.6483
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s662861g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind989.2e-31691892103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT................... CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks................... 74 
                        Fl+k+ye+++d++l+ lisw ++g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+Y     ++ ++ ++                    
  PDK_30s662861g009  69 FLSKTYELVDDPSLDPLISWGSTGRSFVVWDPVEFARAVLPRNFKHNNFSSFVRQLNTYVVGLKNNYRHLEEGsegfirqqeytcihgfrki 160
                        9**********************************************************766555555443335689999988887776654 PP

                        XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  75 kekiweFkhksFkkgkkellekikrkkse 103
                        + + weF+++ F +g+k ll++i+r++s+
  PDK_30s662861g009 161 DADRWEFANEDFVRGNKPLLKNINRRRSS 189
                        49************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.56E-3065186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-4565186IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3366186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-2769186IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-126992IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-12107119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-12120132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEFGAPSASK PRASSPLEPK IEPFGEILDL SPQPPPPVAE KLLSSSSSSS GVAAPRPLEA  60
LQSAPIPPFL SKTYELVDDP SLDPLISWGS TGRSFVVWDP VEFARAVLPR NFKHNNFSSF  120
VRQLNTYVVG LKNNYRHLEE GSEGFIRQQE YTCIHGFRKI DADRWEFANE DFVRGNKPLL  180
KNINRRRSSQ VQEVGSQVGF SAENAKPELE GEFHMLRKEK SALMHEVIKL QQEHLMTAQQ  240
MDALNQRMQS AEQRQKLMVS FLAKALQNPN LLAHLKQLKE RREIPTIRRK FLKQQQSSQS  300
DVDKAMDQQT GKKRLEFNGA TPPGLQGIEC IVSKQLPDNL LQDMVEKLGL DTSSGELLRG  360
SVETGLEVLD TSFLDPDSVA VKVELLESSQ TDMGFSGTEF LASFPEDVTP ERMFSDAIIP  420
ATEFARPDPR TVGFEGKIVM DKTEVTSAGS MCLAEDTSQE TMFSDAIASA SKTSSRQEEI  480
WSIGLEAGES SWSSCHNVWD SLAQDAIELE VAAEPGALWD IDLQTLDEDL EFDRFLGSDF  540
SHKERESSQA GPANKDHKEK MEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-226618917123Heat shock factor protein 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807524.10.0PREDICTED: heat stress transcription factor A-3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-78heat shock transcription factor A3